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Respond to this posting if you have compilation issues.

Cheers,
Sergei

I'm having trouble getting a bugzila account in the server, so meanwhile I'll post it here:

I'm having troubles with the gtk interface on my Ubuntu Hoary:

avb@magneto:~/9_opl/hyphy_latest/HYPHY_Source$ ./gtk_build.sh SP

-----

avb@magneto:~/9_opl/hyphy_latest/HYPHY_Source$ ./HYPHY_GTK

** (HYPHY_GTK:9736): WARNING **: Invalid borders specified for theme pixmap:
       /home/avb/9_opl/hyphy_latest/HYPHY_Source/GTKResources/theme/entry1.png,
borders don't fit within the image

(HYPHY_GTK:9736): Gdk-CRITICAL **: gdk_drawable_set_colormap: assertion `cmap == NULL || gdk_drawable_get_depth (drawable) == cmap->visual->depth' failed

(HYPHY_GTK:9736): Gdk-CRITICAL **: gdk_drawable_set_colormap: assertion `cmap == NULL || gdk_drawable_get_depth (drawable) == cmap->visual->depth' failed

(HYPHY_GTK:9736): Gdk-CRITICAL **: gdk_drawable_set_colormap: assertion `cmap == NULL || gdk_drawable_get_depth (drawable) == cmap->visual->depth' failed

(HYPHY_GTK:9736): Gdk-CRITICAL **: gdk_drawable_set_colormap: assertion `cmap == NULL || gdk_drawable_get_depth (drawable) == cmap->visual->depth' failed

(HYPHY_GTK:9736): Gdk-CRITICAL **: gdk_drawable_set_colormap: assertion `cmap == NULL || gdk_drawable_get_depth (drawable) == cmap->visual->depth' failed

(HYPHY_GTK:9736): Gdk-WARNING **: Using Xft rendering requires the drawable argument to
have a specified colormap. All windows have a colormap,
however, pixmaps only have colormap by default if they
were created with a non-NULL window argument. Otherwise
a colormap must be set on them with gdk_drawable_set_colormap
Violació de segment

-----

This happens when trying to load a data file.

I read in ttf-bitstream-vera-1.10/RELEASENOTES.TXT that this might be related to using Xft2.

I was wondering if you have a way to compile HYPHY_GTK in a more sparse way, without ttf fonts or something, to solve the problem.

Bests,

   Albert Vilella.

Dear Albert,

My guess is that you are running a display which is not 24-bit color; based on the error messages from GTK (about wanting a color map). Since the port is still quite raw, I didn't implement the non 24-bit displays properly. I don't think Xft2 font rendering is the issue (the complaint is also about a color map).

I'll see if I can work around this in the near future.

Could you also do
$gdb /path/to/program/HYPHY core
>where

to pinpoint where the crash took place?

Cheers,
Sergei

yes, I'm in 16, not 24. This is the info for the crash:

gdb ./HYPHY_GTK core
r
(choose a data name to trigger crash)
(crash)
where

#0  0xb7719162 in XftDrawSetClip () from /usr/lib/libXft.so.2
#1  0xb7cd3308 in _gdk_x11_have_render_with_trapezoids ()
  from /usr/lib/libgdk-x11-2.0.so.0
#2  0xb7cd53b4 in _gdk_x11_drawable_draw_xft_glyphs ()
  from /usr/lib/libgdk-x11-2.0.so.0
#3  0xb7ce1b3d in _gdk_x11_renderer_get_type ()
  from /usr/lib/libgdk-x11-2.0.so.0
#4  0xb7c65ce1 in pango_xft_renderer_get_type ()
  from /usr/lib/libpangoxft-1.0.so.0
#5  0xb7c66650 in pango_xft_renderer_get_type ()
  from /usr/lib/libpangoxft-1.0.so.0
#6  0xb7c3fc18 in pango_renderer_deactivate () from /usr/lib/libpango-1.0.so.0
#7  0xb7c3f1b7 in pango_renderer_draw_glyphs () from /usr/lib/libpango-1.0.so.0
#8  0xb7cd3fae in _gdk_x11_have_render_with_trapezoids ()
  from /usr/lib/libgdk-x11-2.0.so.0
#9  0xb7cb1734 in gdk_draw_glyphs_transformed ()
  from /usr/lib/libgdk-x11-2.0.so.0
#10 0xb7cbad7d in gdk_pixmap_get_type () from /usr/lib/libgdk-x11-2.0.so.0
#11 0xb7cb1734 in gdk_draw_glyphs_transformed ()
  from /usr/lib/libgdk-x11-2.0.so.0
#12 0xb7cb6b25 in gdk_pango_renderer_get_type ()
  from /usr/lib/libgdk-x11-2.0.so.0
#13 0xb7c3f1af in pango_renderer_draw_glyphs () from /usr/lib/libpango-1.0.so.0
#14 0xb7c3f079 in pango_renderer_draw_layout_line ()
  from /usr/lib/libpango-1.0.so.0
#15 0xb7cb7b43 in gdk_draw_layout_line_with_colors ()
  from /usr/lib/libgdk-x11-2.0.so.0
#16 0xb7cb809f in gdk_draw_layout_line () from /usr/lib/libgdk-x11-2.0.so.0
#17 0x0814eccf in _HYGraphicPane::DisplayText ()
#18 0x081b1f2e in _HYSequencePane::BuildHeaders ()
#19 0x081b238c in _HYSequencePane::BuildPane ()
#20 0x081b3405 in _HYSequencePane::SetVisibleSize ()
#21 0x081ea7f1 in _HYTWindow::SetWindowRectangle ()
#22 0x080f7114 in _HYDataPanel::SetDataSetReference ()
#23 0x080ec758 in _HYDataPanel::_HYDataPanel ()
#24 0x081458cf in OpenDataFile ()
#25 0x0819a9bb in _HYConsoleWindow::_ProcessMenuSelection ()
#26 0x081ae617 in hyphy_menu_item_callback ()
#27 0xb7e154e0 in gtk_item_factory_new () from /usr/lib/libgtk-x11-2.0.so.0
#28 0xb7c07c9a in g_cclosure_marshal_VOID__VOID ()
  from /usr/lib/libgobject-2.0.so.0
#29 0xb7bf7351 in g_closure_invoke () from /usr/lib/libgobject-2.0.so.0
#30 0xb7c077e2 in g_signal_emit_by_name () from /usr/lib/libgobject-2.0.so.0
#31 0xb7c068f1 in g_signal_emit_valist () from /usr/lib/libgobject-2.0.so.0
#32 0xb7c06b75 in g_signal_emit () from /usr/lib/libgobject-2.0.so.0
#33 0xb7f0ebdf in gtk_widget_activate () from /usr/lib/libgtk-x11-2.0.so.0
#34 0xb7e3af19 in gtk_menu_shell_activate_item ()
  from /usr/lib/libgtk-x11-2.0.so.0
#35 0xb7e3a55c in _gtk_menu_shell_activate () from /usr/lib/libgtk-x11-2.0.so.0
#36 0xb7e339d5 in gtk_menu_reorder_child () from /usr/lib/libgtk-x11-2.0.so.0
#37 0xb7e2cbca in _gtk_marshal_BOOLEAN__BOXED ()
  from /usr/lib/libgtk-x11-2.0.so.0
#38 0xb7bf75bf in g_cclosure_new_swap () from /usr/lib/libgobject-2.0.so.0
#39 0xb7bf7351 in g_closure_invoke () from /usr/lib/libgobject-2.0.so.0
#40 0xb7c07270 in g_signal_emit_by_name () from /usr/lib/libgobject-2.0.so.0
#41 0xb7c066ef in g_signal_emit_valist () from /usr/lib/libgobject-2.0.so.0
#42 0xb7c06b75 in g_signal_emit () from /usr/lib/libgobject-2.0.so.0
#43 0xb7f0ea11 in gtk_widget_send_expose () from /usr/lib/libgtk-x11-2.0.so.0
#44 0xb7e2b7de in gtk_propagate_event () from /usr/lib/libgtk-x11-2.0.so.0
#45 0xb7e2a7bb in gtk_main_do_event () from /usr/lib/libgtk-x11-2.0.so.0
#46 0xb7cd7b0b in _gdk_events_queue () from /usr/lib/libgdk-x11-2.0.so.0
#47 0xb7b8dd0f in g_main_depth () from /usr/lib/libglib-2.0.so.0
#48 0xb7b8ecb5 in g_main_context_dispatch () from /usr/lib/libglib-2.0.so.0
#49 0xb7b8efd7 in g_main_context_dispatch () from /usr/lib/libglib-2.0.so.0
#50 0xb7b8f51e in g_main_loop_run () from /usr/lib/libglib-2.0.so.0
#51 0xb7e2a10f in gtk_main () from /usr/lib/libgtk-x11-2.0.so.0
#52 0x0822252b in main ()

Bests,

   Albert.

PD: I'm setting another Linux to 24 to test it...

I have tried with a Depth of 24 in another computer, and everything seems to work ok.

Is there a way to compile it for Depth 16? Or should I just stick to 24?

Thanks,

   Albert.

Dear Albert,


wrote on Apr 27^th, 2005 at 10:18am:

Is there a way to compile it for Depth 16? Or should I just stick to 24?

The current code doesn't deal with colormaps (which are needed for depths < 24) at all. I'll need to add relevant bits to make GTK happy; it's on my list of things to do now and I will post a note here when the support has been added.

Cheers,
Sergei