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HYPHY Package >> Feature Additions >> [REQUEST] Bootstrap and clustering http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1113417895 Message started by Simon on Apr 13th, 2005 at 11:44am |
Title: [REQUEST] Bootstrap and clustering Post by Simon on Apr 13th, 2005 at 11:44am
Dear Sergei,
A few requests based on trying to identify groupings of sequences and filter them. 1. When generating a nonparametric bootstrap neighbor joining tree, is it possible to annotate the original tree with the bootstrap support? 2. Given a tree, prune it such that no two tips are less than a user-specified distance apart, and output the sequences related to the pruned tree. 3. Given a tree, identify all clades in which each sequence is within a user-specified distance from each other, and output each clade into a separate file. Best Simon |
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