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Methodology Questions >> How to >> scale the tree on syn or nonsyn via script http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1131562650 Message started by Antonio on Nov 9th, 2005 at 10:57am |
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Title: scale the tree on syn or nonsyn via script Post by Antonio on Nov 9th, 2005 at 10:57am
Hi,
I am reproducing an analysis fo codon models as in Kosakovsky et al (2005, Statistical Methods in Molecular Evolution). I just using a MG94 local model. My question is: Once I get the likelihood and the tree I wonder how to scale the tree to synonymous or non-synonymous views via scripting? because I want to get saved separately both tree-views, is that possible? I thought in pstreestring but I dont' know what parameter give to this function. By the way I am enjoying with this wonderful soft. , antonio |
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Title: Re: scale the tree on syn or nonsyn via scri Post by Sergei on Nov 10th, 2005 at 3:09am
Dear Antonio,
Several other people asked me similar questions, and I am preparing some code to address the issue; should be avialable in a day or two. Cheers, Sergei |
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