Hello: I am getting a crass when execute the dNdSRateAnalysis.bf script. Say: P51.nex file, genetic code universal, use tree from the file: yes. Branch length: codon model; MG94 model (or MG94HKY95
or MG94REV) ; rate variation: dual; distrib: independent discrete. initial value by default. syn classes: 4 nonsyn classes: 4.
The dialog to save results is opened and after this I get the crash.

I get a similar crash when define a codon model with the same (or other ) file via open data-> select all-> selection:partition, codon model, a tree (the tree from the file) and parameters: rate het. and build and optimize likelihood fun. This crash happens with at least some of the MG94 models:  MG94, MG94xHKY95x3x2, MG94REV3x4dualRV. In general when I expect a nonsyn and syn scale option in the tree if use MG94 model I get a crash. Any hint?

I am using a Pentium4 with HYPHY-P3.exe ver.9920051024.

Thanks in advance,
Antonio

Dear Antonio,

There was a bug in late October builds which would cause analyses with multiple heterogneous rates to crash.

Try downloading today's build and see if the problem goes away.

Cheers,
Sergei

Dear Sergei all runs fine now, thank you very much,

antonio