Post by Sergei on Mar 27th, 2006 at 7:30am
Dear Olivier,
HyPhy uses the standard IUPAC (Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to
) table to deal with ambiguities (in nucleotide data). All of those are understood and analyzed. See a section in the first chapter of my disseration Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to for exact details. HyPhy is NOT case sesnsitive.
If an unknown charater is encountered, it is ignored in that sequence only. You can also augment the standard table to deal with any character you like. This can be done directly in the datafile, by including an appropriate header.
Cheers,
Sergei
HyPhy uses the standard IUPAC (Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to
) table to deal with ambiguities (in nucleotide data). All of those are understood and analyzed. See a section in the first chapter of my disseration Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to for exact details. HyPhy is NOT case sesnsitive.If an unknown charater is encountered, it is ignored in that sequence only. You can also augment the standard table to deal with any character you like. This can be done directly in the datafile, by including an appropriate header.
Cheers,
Sergei