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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl HYPHY Package >> HyPhy feedback >> clusterbydistancerange http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1156492194 Message started by YER on Aug 25^th, 2006 at 12:49am

Title: clusterbydistancerange
Post by YER on Aug 25^th, 2006 at 12:49am

Dear Sergei,

thanks once again for the recent additions!

One of them, is (for me) a bit unlogical. Upon running clusterbydistance.bf a number of clusters result that are indicated by a cluster ID; yet some of the cluster IDs occur only once in the output.

Could you indicate how can one identify the other sequences belonging to a cluster?

Thanks, YER

Title: Re: clusterbydistancerange
Post by Sergei on Aug 25^th, 2006 at 8:52am

Dear Yer,

A cluster of size 1 is possible in this analyses (imagine for example, a clock-like star tree - you will either get 1 cluster with N sequences, or N clusters with 1 sequence each) - this is what a single occurrence of a cluster ID indicates.

HTH,
Sergei