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HYPHY Package >> HyPhy bugs >> MOLECULAR CLOCK ALL ROOTS
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Message started by Denis Fargette on Oct 18th, 2006 at 6:27am

Title: MOLECULAR CLOCK ALL ROOTS
Post by Denis Fargette on Oct 18th, 2006 at 6:27am
Dear Sergei,

When I use the last version of Hyphy (21st of september 2006), I face a problem with the MolecularclockAllroots module in the Standard Analysis. After correctly testing the internal nodes, the following message error appears: 'clockTree. Tz3* is already being used - please rename one of the two variables. Current BL Command Build Tree clock from string atRerootedTree Current task has been terminated'.

The same task was performed with the same data file  in earlier HYPHY version without facing this problem, for instance the one of the 6th of June 2006.

Please let me know if am unclear. With many thanks for your help. Best Regards. Denis.

* Tz3 is the name of the first taxon of the tree in the newick chain.

Title: Re: MOLECULAR CLOCK ALL ROOTS
Post by Sergei on Oct 18th, 2006 at 8:49pm
Dear Denis,

Thanks for the report; I found the bug and will fix it in the next build.

Cheers,
Sergei

P.S. [Oct 27, 2006]. It today's builds the problem should go away.

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