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HYPHY Package >> Feature Additions >> [ADDITION] GA Branch batch files http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1164153629 Message started by Sergei on Nov 21st, 2006 at 4:00pm |
Title: Re: [ADDITION] GA Branch batch files Post by krish on Nov 30th, 2006 at 6:52pm
Dear All,
I have been trying to run the GA branch specific detection locally. I started the batch file ModelSelectorBranchLocal.bf and then it asks for my datafile. But when I input my file. IT give out an error: GABranchspecific#189EA3:_BMS_Aux.ibf could not be opened by fscanf. Current BL Command:Read the following data "_BMS_Aux.ibf":Raw into sampleCount; Current operation/job has been terminated. Any help would be greatly appretiated. Thanks, Vijay |
Title: Re: [ADDITION] GA Branch batch files Post by Sergei on Nov 30th, 2006 at 8:18pm
Dear Vijay,
Please make sure you are running the latest version of HyPhy and that the _BMS_Aux.ibf file is in the same directory. A sufficiently recent version of HyPhy will also print out a path stack to the console if it can't locate a file that is required. If the problem persists, let me know. Cheers, Sergei |
Title: Re: [ADDITION] GA Branch batch files Post by tlefebure on Dec 5th, 2006 at 7:47am
Dear Sergei,
I have a similar problem. I use, on a cluster, the version: Code (]/HYPHY 0.9920060914beta(MPI) for Linux on x86_64\ [/code):
with Code (] set DATA=pbp1a.phy set ANSW=answers set MPIDIR=/opt/mpich/gnu/bin set HYPHY=/state/partition1/HYPHY_Source/HYPHYMPI set HYPHYDIR=/state/partition1/HYPHY_Source/ [/code):
What is the "_BMS_Aux.ibf" file? Is my HYPHY out of date? Thank you Sergei... -Tristan |
Title: Re: [ADDITION] GA Branch batch files Post by Sergei on Dec 5th, 2006 at 8:15am |
Title: Re: [ADDITION] GA Branch batch files Post by tlefebure on Dec 5th, 2006 at 8:47am
Yes, it runs now with the additional ibf files.
Cheers, -Tristan |
Title: Re: [ADDITION] GA Branch batch files Post by tlefebure on Sep 30th, 2010 at 2:06am
Thanks Sergei,
I found the problem: the data set and tree have to be copied to all the nodes, not just the head node... Works much faster now! --Tristan |
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