HyPhy message board | |
http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl
HYPHY Package >> Feature Additions >> [ADDITION] Batch genome analysis http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1170892937 Message started by Sergei on Feb 7th, 2007 at 4:02pm |
Title: Re: [ADDITION] Batch genome analysis Post by Mike on Sep 20th, 2007 at 3:20am
Hi Sergei - this looks like just the kind of analysis that I need to do. Have you continued to develop this since you posted the message in Feb? If you have more recent code I will be happy to try it out.
cheers Mike |
Title: Re: [ADDITION] Batch genome analysis Post by Sergei on Sep 20th, 2007 at 6:52am
Dear Mike,
wrote on Sep 20th, 2007 at 3:20am:
I have streamlined the code and written documentation on how to develop new modules, but I haven't added more modules. The whole pipeline is being integrated into the Galaxy data analysis framework, developed at Penn State U, so eventually there should be quite a few. I updated the original link with the latest files. Cheers, Sergei |
Title: Re: [ADDITION] Batch genome analysis Post by sergios-orestis on Apr 20th, 2012 at 5:47pm
Dear Sergei,
I was wondering if you had revised/updated GenomeFitters since that 2007 post or if there is another bf we could use. I would like very much to scan for positively selected codons individual alignments (thousands of them) from bacterial NGS data. Any advice is most welcome, as always. Best, Sergios |
HyPhy message board » Powered by YaBB 2.5.2! YaBB Forum Software © 2000-2024. All Rights Reserved. |