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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Datamonkey Server >> Datamonkey feedback >> Sequence ambiguities and GARD http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1226938875 Message started by Lisle on Nov 17^th, 2008 at 8:21am

Title: Sequence ambiguities and GARD
Post by Lisle on Nov 17^th, 2008 at 8:21am

How does GARD deal with partial ambiguities in sequences (e.g. R's, W's etc) that are being assessed for recombination?

Thanks, Lisle Gibbs

Title: Re: Sequence ambiguities and GARD
Post by Sergei on Nov 17^th, 2008 at 10:56am

Dear Lisle,

GARD (and all HYPHY-based analyses) deal with ambiguities as partially missing data. A detailed explanation can be found in Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Title: Re: Sequence ambiguities and GARD
Post by Lisle on Nov 17^th, 2008 at 11:09am

Thanks for the quick reply!