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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Datamonkey Server >> Datamonkey feedback >> Running Spidermonkey/BGM locally http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1240863279 Message started by Sarah on Apr 27^th, 2009 at 1:14pm

Title: Running Spidermonkey/BGM locally
Post by Sarah on Apr 27^th, 2009 at 1:14pm

Is it possible to perform Spidermonkey locally? I naively tried to run TemplateBatchFiles/BGM.bf, as I couldn't find a clear option in the GUI menu.

Thanks again,
Sarah

Title: Re: Running Spidermonkey/BGM locally
Post by Sergei on Apr 27^th, 2009 at 4:41pm

Dear Sarah,

BGM is available as an option under QuickSelectionDetection.bf (not the most logical place for sure!). Follow the same option path as you would for SLAC, but select BGM co-evolution in the 'Ancestor Counting Options' menu and then follow the prompts.

HTH,
Sergei

Title: Re: Running Spidermonkey/BGM locally
Post by Sarah on Apr 29^th, 2009 at 10:34am

Ah, hadn't looked there. Thanks!

Title: Re: Running Spidermonkey/BGM locally
Post by artpoon on May 5^th, 2009 at 9:29pm

Hi Sarah,

I'm hoping to integrate BGMs into HyPhy in a more user-accessible fashion, so we would really benefit from your feedback about your end-user experience! For example, where you'd intuitively expect to find BGM methods. :)

- Art.