HyPhy message board - Print Page

HyPhy message board
http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Theoretical questions >> Sequence Analysis >> recombination http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1271261436 Message started by EHC on Apr 14^th, 2010 at 9:10am

Title: recombination
Post by EHC on Apr 14^th, 2010 at 9:10am

Hi,

I am new here. I would like to run a recombination analysis.
When I choose gard.bf on my OSX I get "This analysis requires an MPI environment to run". I am not sure if I am missing something on my computer.

Thank you,
EHC

Title: Re: recombination
Post by artpoon on Apr 14^th, 2010 at 9:23am

Hi EHC,

MPI stands for message passing interface and is a communication protocol that allows one processor to talk to others. GARD uses this to distribute jobs across multiple processors, and is often run in a clustered computing environment. It -is- possible to compile an MPI-enabled build of HyPhy on a Mac and take advantage of multi-core processors in this fashion, but not trivial.

Cheers,
- Art.

Title: Re: recombination
Post by EHC on Apr 14^th, 2010 at 9:41am

Thanks. Can someone point me to the instructions ?

Title: Re: recombination
Post by artpoon on Apr 14^th, 2010 at 9:46am

Using the search function on the board for keywords "MPI" and "mac" turns up this topic:

Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Title: Re: recombination
Post by wayne on Apr 15^th, 2010 at 6:42pm

yeah or just use the GARD analysis option on the webserver Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to