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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Methodology Questions >> How to >> Data format: Codon? http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1275987416 Message started by FanLee on Jun 8^th, 2010 at 1:56am

Title: Data format: Codon?
Post by FanLee on Jun 8^th, 2010 at 1:56am

You suggest that the data type for running SLAC, FEL, and REL is "codon", but not nucleotide or protein sequences.

(Do I need to transfer "ATGAAATCGTTT" with space between into "ATG AAA TCG TTT"? :o)

How do I prepare the "codon" sequences in txt format file? I need to know that, otherwise I cannot analyze my data.

Thank!!

Title: Re: Data format: Codon?
Post by Sergei on Jun 8^th, 2010 at 12:55pm

Hi FanLee,

Codon data are nucleotide alignments that contain coding sequences; you don't need to format them in any special way other than to ensure that there are no premature stop codons. Please take a look at Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to