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Methodology Questions >> How to >> How to understand the discordance of GARD and SBR? http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1284533726 Message started by kevintz on Sep 14th, 2010 at 11:55pm |
Title: How to understand the discordance of GARD and SBR? Post by kevintz on Sep 14th, 2010 at 11:55pm
Hi,
I use datamonkey for recombination analysis. GARD indicated no evidence of recombination, but SBR(Single Breakpoint Recombination) methods indicated that there was a breakpoint at 193, with a support of >99%, whether recombination inferred using AIC or cAIC. I am not sure about the discordance. Is there any recombiantion in my sequence? THanks in advance. kevintz |
Title: Re: How to understand the discordance of GARD and SBR? Post by Sergei on Sep 15th, 2010 at 7:13am
Hi kevintz,
Can you include the links to SBP and GARD result pages? Sergei |
Title: Re: How to understand the discordance of GARD and SBR? Post by kevintz on Oct 15th, 2010 at 4:39am
THANKS a lot. I get it.
but how can I know rate variation should be included in my dataset? On the resulting page of GARD analysis results, If the model used is different with model selected by datamonkey, does that mean the rate variation should be considered?? |
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