I've downloaded v2.0 developmental build for Windows twice and both times get the following error message

"I couldn't find any valid model templates in 'C:\Users\Nick\Downloads\HYPHY_Win32\HYPHY_Win32\SubstitutionModels'. Please check your installation of HYPHY for missing files.I couldn't find any valid genetic code tables in 'C:\Users\Nick\Downloads\HYPHY_Win32\HYPHY_Win32\GeneticCodes'. You can still use the Universal code which is built-in.
8 Intel x86 architecture  processors detected.  You can change the number of processors utilized by HyPhy via the HyPhy settings dialog."

Also, the following folders within HYPHY\SubstitutionModels\User are empty:  AA, Codon, and Dinucleotide, and Nucleotide has only 2 documents titled JC69 and K2P.

How do I resolve this?

Thanks.

Hi Nick,

The default (standard models) should be in TemplateBatchFiles/TemplateModels
HyPhy is not very clever about finding where the supporting files are -- the executable itself is expected to be in the same directory (C:\Users\Nick\Downloads\HYPHY_Win32\HYPHY_Win32\ in your case), as the rest of the files. Have you decompressed the .zip archive, or are you using the built-in Windows .zip file browser to view and launch the files? You need to do the former, otherwise HyPhy will not find any of the supporting files.

Sergei

Thank you for responding to my inquiry.  HYPHY_WIN32 was decompressed and the executable was already in the same directory as all the other files.  I just noticed that not all of the files in the .zip were present in my decompressed folder.  The program appears to be working now that I've copied all of the files.

Thanks again!