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HYPHY Package >> HyPhy bugs >> Crash during start sequence (windows version)
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Message started by joao almeida on Nov 15th, 2010 at 3:52am

Title: Crash during start sequence (windows version)
Post by joao almeida on Nov 15th, 2010 at 3:52am
Hi,

I have been trying to replicate the Phylogenetics Handbook examples for some time, but I cannot get the HyPhy to work.
During the program start sequence (fresh install, either ZipGenius or IZArc2Go) I get :

"Error:Matrix/List LHS expected but not supplied.
Call stack
1 : Model_EFV_Vector[0]=0.087127

Error:Problem occurred in line:Model_EFV_Vector[0]=0.087127
Call stack
1 : Model_EFV_Vector[0]=0.087127

Error:Matrix/List LHS expected but not supplied.
Call stack
1 : Model_EFV_Vector[0][0]=0.076748

Error:Problem occurred in line:Model_EFV_Vector[0][0]=0.076748
Call stack
1 : Model_EFV_Vector[0][0]=0.076748

Error:Attempting to operate on an undefined value; this is probably a result of an earlier 'soft' error condition Exiting..."

In Vista the program seems to be partly functional, but collapses when going for the alignment. In Win7 it crashes altogether.

I tried different places within the file system to no avail. I even tried to move files around, and meddling with the suspect files.
I am always using a fresh download of your development version.

I should have been doing something wrong... But what!?... :'(

Title: Re: Crash during start sequence (windows version)
Post by Sergei on Nov 15th, 2010 at 10:54am
Ho joao,

Sorry HyPhy is crashing on your system. Could you tell me which example you were trying to work through when the error messages were displayed?

Sergei

Title: Re: Crash during start sequence (windows version)
Post by joao almeida on Nov 15th, 2010 at 3:18pm
Just starting the program... In Win7 (the error log presented) it cannot even start. In (other PC) Vista it appears to work for a while, but crashes when I try to perform any analysis.

folderHyPhy2.JPG (31 KB | )

Title: Re: Crash during start sequence (windows version)
Post by joao almeida on Nov 17th, 2010 at 11:17am
Environmental variables? Could it be related to them?...

Title: Re: Crash during start sequence (windows version)
Post by Sergei on Nov 18th, 2010 at 12:53pm
Hi joao,

I don't have access to a Windows 7 system for testing; the crashing on Vista is definitely abnormal. I just recompiled a new version of HyPhy -- would you try it to confirm the crashing behavior? I was not able to reproduce the error on my Vista test box. Does HyPhy crash for ANY analysis, or just the Phylogenetic Handbook analysis?

Sergei

Title: Re: Crash during start sequence (windows version)
Post by joao almeida on Nov 28th, 2010 at 11:29am
Many thanks,

I will try the new version as soon as I download it.

....

Ok,
I just finished downloading, decompressing, and installing the new compiled version.
The program starts all right under Vista. None of the usual  'invalid model' messages appeared. :D
I will proceed with intended analysis, and I will report on any weird behaviour (if found).

Thanks again,

jmfa

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