HyPhy message board - Print Page

HyPhy message board
http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl HYPHY Package >> HyPhy feedback >> data files http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1299103278 Message started by Steve J on Mar 2^nd, 2011 at 2:01pm

Title: data files
Post by Steve J on Mar 2^nd, 2011 at 2:01pm

Where are the example data and batch files mentioned in Estimating Selectin pressures on coding sequences documentation in the Windows version 2.0. for example on page 23, it mentions BranchAPriori.bf (not in the batch templates folder) and Primate Lysozyme data set. In fact I see no example data files when unzipeed

Title: Re: data files
Post by Sergei on Mar 2^nd, 2011 at 2:22pm

Hi Steve,

They are all online Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Login
You can also access BranchAPriori (and other analyses from the chapter) by opening "Standard Analyses:Miscellaneous:Phylohandbook.bf"

Sergei

Title: Re: data files
Post by Steve J on Mar 2^nd, 2011 at 2:24pm

Great Thanks

Title: Re: data files
Post by Steve J on Mar 9^th, 2011 at 8:52am

Hey Sergei,
I am kind of anal about following the manual and couldn't find the p51.nex file in the data zip file. Is it somewhere else. thanks

Title: Re: data files
Post by Sergei on Mar 9^th, 2011 at 9:36am

Hi Steve,

p51.nex used to be in the package distribution itself, and somehow disappeared. Thanks for alerting me to this issue. I will make sure the example files are included in the HyPhy distribution once again.

In the meantime, I am attaching the file for your convenience.

Sergei

Steve J wrote on Mar 9^th, 2011 at 8:52am:

Hey Sergei,
I am kind of anal about following the manual and couldn't find the p51.nex file in the data zip file. Is it somewhere else. thanks

http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?action=downloadfile;file=p51_nex.zip (1 KB | )

Title: Re: data files
Post by Steve J on Mar 9^th, 2011 at 9:59am

thanks Sergei

Title: Re: data files
Post by Steve J on Mar 9^th, 2011 at 11:57am

Sergei
sorry to ask again but can you send me the integrase_BDA.nex file. thanks

Title: Re: data files
Post by Sergei on Mar 10^th, 2011 at 4:11pm

Hi Steve,

Try Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Title: Re: data files
Post by Steve J on Mar 11^th, 2011 at 6:56am

Thanks Sergei