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Methodology Questions >> How to >> how to do ASR by datamonkey using my own tree http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1299117202 Message started by jglee on Mar 2nd, 2011 at 5:53pm |
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Title: how to do ASR by datamonkey using my own tree Post by jglee on Mar 2nd, 2011 at 5:53pm
I am trying to do acestral sequence reconstruction of codon sequences by DataMonkey webpakage, however, the tree I can choose is only the default neigbor joining tree.
Could you tell me how to do ASR using my own tree, or how to perform ASR by HyPhy. I am not familiar with HyPhy.Thanks a lot. |
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Title: Re: how to do ASR by datamonkey using my own tree Post by Linxi on May 28th, 2011 at 5:58pm
In my opinion,you can using Hyphy to generate a .nex file that include tree
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Title: Re: how to do ASR by datamonkey using my own tree Post by Sergei on May 28th, 2011 at 7:08pm jglee wrote on Mar 2nd, 2011 at 5:53pm:
Sorry I missed your original post; Linxi is correct -- so long as the uploaded file includes a user tree (e.g. in the TREE block of a NEXUS file), it should be available for you to use in Datamonkey. Sergei |
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