HyPhy message board - Print Page

HyPhy message board
http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl HYPHY Package >> HyPhy feedback >> 2-ratio model http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1304343811 Message started by benja on May 2^nd, 2011 at 6:43am

Title: 2-ratio model
Post by benja on May 2^nd, 2011 at 6:43am

Hi,

Is it possible to implement in HyPhy a 2-ratio model for the analysis of substitution rates in two clades of a tree (analogous to that implemented in PAML with model=2)?

I have been able to implement a “3-ratio model” with Compartmentalization.bf, with a ratio for each of the clades of interest and a third one for the branch separating them, but I have not been able to implement a model with just 2 ratios.

Thanks a lot in advance for your help,

Benja

Title: Re: 2-ratio model
Post by Sergei on May 2^nd, 2011 at 8:56am

Dear Benja,

Take a look at Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to