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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Methodology Questions >> How to >> What is gamma distributed in GY94W9? http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1304910557 Message started by Xavier Goldie on May 8^th, 2011 at 8:09pm

Title: What is gamma distributed in GY94W9?
Post by Xavier Goldie on May 8^th, 2011 at 8:09pm

I am using the GY94W9 codon model, but can anyone tell me what it actually is in the model that has a gamma distribution?

Title: Re: What is gamma distributed in GY94W9?
Post by Sergei on May 9^th, 2011 at 7:36am

Hi Xavier,

By default, the gamma distributed quantity is the baseline substitution rate; much like in standard nucleotide models. If you are looking for gamma- (or otherwise) distributed omegas, take a look at Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to