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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl HYPHY Package >> HyPhy feedback >> a Problem of codon selection analysis http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1310653944 Message started by Linxi on Jul 14^th, 2011 at 7:32am

Title: a Problem of codon selection analysis
Post by Linxi on Jul 14^th, 2011 at 7:32am

Dear Hyphy team,
I run into a problem.When execute the dNdSresultprocessor.bf,by selecting Distributions,Dual,and postscript,I got a plot attached.However,it seems didn't have some document about it ,and my question is how to interpret the plot?I quite puzzle about it ?

Thank you very much!

distribution.png (30 KB | )

Title: Re: a Problem of codon selection analysis
Post by Sergei on Jul 14^th, 2011 at 11:46am

Hi Linxi,

You may find the following figure and caption from Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Title: Re: a Problem of codon selection analysis
Post by Linxi on Jul 15^th, 2011 at 1:47am

Hi Sergei,
Thank you very much for your reply ! Another question,whether the BivariateCodonRateAnalysis.bf equilibrium to Evolutionary Fingerprinting Analysis in Datamonkey?

Best wishes,
Linxi

Title: Re: a Problem of codon selection analysis
Post by Sergei on Jul 18^th, 2011 at 12:32pm

Hi Linxi,

In Datamonkey, this analysis is under "Evolutionary Fingerprinting".

Sergei