HyPhy message board - Print Page

HyPhy message board
http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl HYPHY Package >> HyPhy feedback >> can I use hyphy to choose a suitable substitution model? http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1328670590 Message started by Emanon on Feb 7^th, 2012 at 7:09pm

Title: can I use hyphy to choose a suitable substitution model?
Post by Emanon on Feb 7^th, 2012 at 7:09pm

Hi Sergei:
Can hyphy just like the software modeltest or jmodeltest to choose a suitable substitution model?If yes,how?

Title: Re: can I use hyphy to choose a suitable substitution model?
Post by Sergei on Feb 7^th, 2012 at 8:31pm

Hi there,

Yes, you can; there is a standard analysis called NucModelCompare.bf which compares all 203 nucleotide time-reversible models and tells you which one is the best choice. See section 2.3.7 in Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to