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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Datamonkey Server >> Datamonkey feedback >> How does one input a tree into Datamonkey? http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1338908546 Message started by Dan Fulop on Jun 5^th, 2012 at 8:02am

Title: How does one input a tree into Datamonkey?
Post by Dan Fulop on Jun 5^th, 2012 at 8:02am

Hi HyPhy community,

I want to run analyses on Datamonkey with a user-specified tree instead of a neighbor-joining tree. Is this possible? If so, how does one input such a tree?

Thanks,
Dan.

Title: Re: How does one input a tree into Datamonkey?
Post by Sergei on Jun 5^th, 2012 at 11:02am

Hi Dan,

This is not only possible, but in fact, encouraged. All you need to do is include a tree in the alignment file, as shown in Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Title: Re: How does one input a tree into Datamonkey?
Post by Dan Fulop on Jun 5^th, 2012 at 11:47am

Great, thanks!

Title: Re: How does one input a tree into Datamonkey?
Post by Alice33 on Jun 6^th, 2012 at 7:15pm

Hi,
I still can't get a tree to upload. I've tried all the formats. Any suggestions? Could it be a browser issue?
Thanks.

Title: Re: How does one input a tree into Datamonkey?
Post by Sergei on Jun 6^th, 2012 at 10:02pm

Can you attach your alignment file?