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HYPHY Package >> HyPhy feedback >> How to find queryTree.bf in new version?!? http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1354043784 Message started by Frog2 on Nov 27th, 2012 at 11:16am |
Title: How to find queryTree.bf in new version?!? Post by Frog2 on Nov 27th, 2012 at 11:16am
I started using HYPHY version 0.9920070529beta for MacOSX. My colleague wrote me a batch file to conduct positive selection assays. This program called the file queryTree.bf in one of the HYPHY application folders. When I looked at my application folder in version 0.99 I could see a TemplateBatchFiles folder where the queryTree.bf was stored.
I recently upgraded to version 2.0. I now receive an error when I try to run HYPHY with my batch file since it cannot find the queryTree.bf file. When I look in my application folder I do not see the HYPHY subfolders as I did in version 0.99. What is the new location for the queryTree.bf file? How do I use my batch file in the newer version? Thank you! |
Title: Re: How to find queryTree.bf in new version?!? Post by Sergei on Nov 28th, 2012 at 4:34am
Hi there,
In the 2.0 version all the folders are inside the application bundle: you can control click on the icon and select "Show Package Contents" to reveal all the files. The standard way to include this file is to use something like [code] ExecuteAFile (HYPHY_LIB_DIRECTORY + "TemplateBatchFiles" + DIRECTORY_SEPARATOR + "queryTree.bf"); [/code] This will make use of the built-in HYPHY_LIB_DIRECTORY variable which should be set to the right value automatically. Sergei |
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