HyPhy message board - Print Page

HyPhy message board
http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Datamonkey Server >> Datamonkey feedback >> Prime user tree option http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1374693228 Message started by matias on Jul 24^th, 2013 at 12:13pm

Title: Prime user tree option
Post by matias on Jul 24^th, 2013 at 12:13pm

Hello,

I want to run the PRIME analysis with the "user defined" tree option, but the analysis generates an output using a NJ tree. Other analyses run fine with the same file (e.g. MEME). Any idea?

thanks

Title: Re: Prime user tree option
Post by Sergei on Jul 24^th, 2013 at 12:16pm

Hi Matias,

That could be a bug in Datamonkey code. I presume you selected the User tree option on the PRIME analysis setup page?

Sergei

Title: Re: Prime user tree option
Post by matias on Jul 24^th, 2013 at 12:32pm

Yes I selectd that.
Thanks for your response I and will wait for more info about that bug.

Title: Re: Prime user tree option
Post by Sergei on Jul 24^th, 2013 at 3:00pm

Hi Matias,

The analyses were using User Trees; the bug was in the script that listed the tree option in the queueing page. This has now been fixed.

Sergei