HyPhy message board | |
http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl
Methodology Questions >> How to >> Sliding windows to show individual codons under selection http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1378909967 Message started by DanniUEA on Sep 11th, 2013 at 7:32am |
Title: Sliding windows to show individual codons under selection Post by DanniUEA on Sep 11th, 2013 at 7:32am
Hi
I was wondering if it is possible, using the DataMonkey site, to carry out calculations of dn/ds using a sliding window? i.e. looking across several (of the same gene) sequences for a number of closely-related species, and measuring dn/ds for each codon going in one direction, and flagging up individual codons inferred to be under selection (be it positive or purifying). I know this has been done with MHC genes with regards to genes that encode peptide-binding regions, and I am also working with an immune gene group. Any advice would be great, Cheers. |
HyPhy message board » Powered by YaBB 2.5.2! YaBB Forum Software © 2000-2024. All Rights Reserved. |