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HYPHY Package >> HyPhy feedback >> Installation problems http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1380230028 Message started by Tessa on Sep 26th, 2013 at 2:13pm |
Title: Installation problems Post by Tessa on Sep 26th, 2013 at 2:13pm
I am attempting to install the command line version of hyphy on a mac running 10.8.2. I have downloaded Xcode and cMake from Homebrew. When I use the command "cmake ./" I get a slew of error messages like: Performing Test OpenMP_FLAG_DETECTED - Failed. I googled this, and it looks like mountain lion does not support openMP. I have tried different suggestions I've found on-line for getting around this issue, but hyphy is still not compiling. Do you have any suggestions.
Thanks Tessa |
Title: Re: Installation problems Post by Steven on Sep 26th, 2013 at 3:13pm
Hi Tessa,
Have you tried running Code (c++):
after Code (c++):
OpenMP_FLAG_DETECTED - Failed is just a check that cmake is performing in order to create the correct Makefiles. |
Title: Re: Installation problems Post by Tessa on Sep 27th, 2013 at 9:40am
Thanks for the reply. I tried the commands you suggested but to the same end. Here are the last few lines after running "make HYPHYMP":
WARNING: Target "hyphy_mp" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYMP" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYOCL" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYDEBUG" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. -- Generating done -- Build files have been written to: /Users/vlb2/Downloads/hyphy-2.2 Scanning dependencies of target HYPHYMP CMake Error: Directory Information file not found [100%] Built target HYPHYMP I do end up with a hyphy folder in the path usr/local/lib/hyphy, but as far as I can tell, there is no executable. I appreciate your time and help, Tessa |
Title: Re: Installation problems Post by Steven on Sep 27th, 2013 at 9:56am
Hi Tessa,
The fact that I see: Quote:
Tells me it must have built. It looks like you are building in the folder [code]/Users/vlb2/Downloads/hyphy-2.2/[/code] Do you want to try looking for the binary there? |
Title: Re: Installation problems Post by Sergei on Sep 27th, 2013 at 9:59am
Hi Tessa,
You should also issue a [code] $make install [/code] command if you wish the build files to go to their designated directories. Sergei |
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