Hi,

I am trying to install Hyphy on Fedora 16 but I am getting several error messages which I can not sort out. Any help on this:

[jperdigao@jperdigao hyphy-master]$ sudo cmake .
-- Could NOT find OpenCL (missing:  OPENCL_LIBRARIES OPENCL_INCLUDE_DIR)
-- Could NOT find MPI_C (missing:  MPI_C_LIBRARIES MPI_C_INCLUDE_PATH)
-- Could NOT find MPI_CXX (missing:  MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH)
-- Configuring done
WARNING: Target "hyphy_mp" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it.  CMake does not define behavior for this case.
WARNING: Target "HYPHYMP" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it.  CMake does not define behavior for this case.
WARNING: Target "HYPHYDEBUG" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it.  CMake does not define behavior for this case.
WARNING: Target "HYPHYGTK" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it.  CMake does not define behavior for this case.
-- Generating done
-- Build files have been written to: /home/jperdigao/biosoft/hyphy-master
[jperdigao@jperdigao hyphy-master]$ sudo make HYPHYGTK
[  0%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/new/bayesgraph.cpp.o
/home/jperdigao/biosoft/hyphy-master/src/new/bayesgraph.cpp: In member function ‘void _BayesianGraphicalModel::CacheNodeScores()’:
/home/jperdigao/biosoft/hyphy-master/src/new/bayesgraph.cpp:1357:66: error: ‘HY_SL_TASK’ was not declared in this scope
/home/jperdigao/biosoft/hyphy-master/src/new/bayesgraph.cpp:1357:77: error: ‘HY_SL_PERCENT’ was not declared in this scope
/home/jperdigao/biosoft/hyphy-master/src/new/bayesgraph.cpp: In member function ‘void _BayesianGraphicalModel::GraphMetropolis(bool, long int, long int, long int, _Parameter, _Matrix*)’:
/home/jperdigao/biosoft/hyphy-master/src/new/bayesgraph.cpp:2110:62: error: ‘HY_SL_TASK’ was not declared in this scope
/home/jperdigao/biosoft/hyphy-master/src/new/bayesgraph.cpp:2110:73: error: ‘HY_SL_PERCENT’ was not declared in this scope
make[3]: *** [CMakeFiles/HYPHYGTK.dir/src/new/bayesgraph.cpp.o] Error 1
make[2]: *** [CMakeFiles/HYPHYGTK.dir/all] Error 2
make[1]: *** [CMakeFiles/HYPHYGTK.dir/rule] Error 2
make: *** [HYPHYGTK] Error 2
[jperdigao@jperdigao hyphy-master]$ make install
Linking CXX executable HYPHYQT
/usr/bin/ld: cannot find -lcrypto
/usr/bin/ld: cannot find -lssl
collect2: ld returned 1 exit status
make[2]: *** [HYPHYQT] Error 1
make[1]: *** [CMakeFiles/HYPHYQT.dir/all] Error 2
make: *** [all] Error 2
[jperdigao@jperdigao hyphy-master]$

Thanks in advance.

Regards,

J. Perdigão

Hi there,

I pushed a fix to the git repository (there was a missing include). Please pull the update and recompile.

Sergei