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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl HYPHY Package >> HyPhy feedback >> User Tree in branch site REL http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1394119756 Message started by ZigZag on Mar 6^th, 2014 at 7:29am

Title: User Tree in branch site REL
Post by ZigZag on Mar 6^th, 2014 at 7:29am

Hi !

It seemed to me that we could run a branch site REL analysis providing our own tree instead of using the proposed NJ tree. But the option is not (no longer ?) available in the "Analysis Options" menu. Can you help me on this ?

Thanks !!

Raquel

Title: Re: User Tree in branch site REL
Post by Sergei on Mar 6^th, 2014 at 10:49am

Hi Raquel,

The option should still be available. My guess is that datamonkey did not recognize the tree included in the file when you uploaded it.
Can you attach the file here for me to look at (or e-mail it to me)?

Sergei