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HYPHY Package >> HyPhy feedback >> Installation problem (OpenMP flag) http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1395090267 Message started by Eduardo Amorim on Mar 17th, 2014 at 2:04pm |
Title: Installation problem (OpenMP flag) Post by Eduardo Amorim on Mar 17th, 2014 at 2:04pm
I've seen this problem before in other posts and tried to do what was suggested then, but unfortunately nothing worked.
I try to compile HyPhy in my Mac with cmake ./ And I have error messages such as: -- Try OpenMP CXX flag = [-qsmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-mp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Could NOT find OpenMP (missing: OpenMP_C_FLAGS OpenMP_CXX_FLAGS) -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) -- Found unsuitable Qt version "" from NOTFOUND -- Configuring done WARNING: Target "hyphy_mp" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYMP" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYOCL" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYDEBUG" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. -- Generating done -- Build files have been written to: /Users/eduardo/Downloads/hyphy-master If I try make HYPHYMP or make MP2 I get something like: dyn-128-59-46-54:hyphy-master eduardo$ make MP2 [ 0%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o In file included from /Users/eduardo/Downloads/hyphy-master/src/core/_hyExecutionContext.cpp:31: In file included from /Users/eduardo/Downloads/hyphy-master/src/core/include/variablecontainer.h:43: In file included from /Users/eduardo/Downloads/hyphy-master/src/core/include/variable.h:48: /Users/eduardo/Downloads/hyphy-master/src/core/include/formula.h:98:25: error: friend declaration specifying a default argument must be a definition friend long Parse (_Formula*, _String&, _FormulaParsingContext&, _Formula* = nil); ^ /Users/eduardo/Downloads/hyphy-master/src/core/include/formula.h:101:25: error: friend declaration specifying a default argument must be a definition friend long ExecuteFormula (_Formula*, _Formula*, long, long, _VariableContainer* = ni... ^ 2 errors generated. make[3]: *** [CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o] Error 1 make[2]: *** [CMakeFiles/HYPHYMP.dir/all] Error 2 make[1]: *** [CMakeFiles/MP2.dir/rule] Error 2 make: *** [MP2] Error 2 What am I doing wrong? How could I solve this problem? Thanks, Eduardo |
Title: Re: Installation problem (OpenMP flag) Post by fawe on Apr 25th, 2014 at 6:03am
Hi,
I just want to put forward my interest in a solution to this as I'm currently encountering exactly the same problem. Many thanks, Fanny |
Title: Re: Installation problem (OpenMP flag) Post by Sergei on Apr 25th, 2014 at 10:42am |
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