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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Methodology Questions >> How to >> Write a sequence data to file http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1397587402 Message started by hyphyInfant on Apr 15^th, 2014 at 11:43am

Title: Write a sequence data to file
Post by hyphyInfant on Apr 15^th, 2014 at 11:43am

Hi,

I am simulating codon sequence data and I will, for example, like to be able to confirm what the simulated data look like by being able to write and save it as a ".txt" file, say. Hence, should I wish to use the data any other time I could simply call it using the "ReadDataFile" command. I tried using "fprintf" and I only got a summary containing the number of sites, species, distinct sites, etc. Any assistance will be appreciated.

hyphyInfant,
Thanks in advance.

Title: Re: Write a sequence data to file
Post by Sergei on Apr 16^th, 2014 at 4:14pm

Hi there,

[code]
DATA_FILE_PRINT_FORMAT = VALUE; //optional
fprintf (PATH_TO_FILE, myFilter);[/code]
where 'myFilter' is DataSetFilter (not a DataSet). The values for the format (default is NEXUS) environment variable are given here. Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Title: Re: Write a sequence data to file
Post by hyphyInfant on Apr 16^th, 2014 at 10:30pm

Hello Sergei,

Many thanks for your timely and well detailed response.

hyphyInfant.