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HYPHY Package >> HyPhy bugs >> Strange behavior of FUBAR
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Message started by mahajrod on May 24th, 2014 at 5:12pm

Title: Strange behavior of FUBAR
Post by mahajrod on May 24th, 2014 at 5:12pm
Good day.

I have a problem with FUBAR - it returns strange results for both mine and test data.

1) it didnt fins any sites under positive selection even in test data
2) it returns SAME parameters for all sites

For example, for test data  lysin.nex.fubar.csv consists of header and 134 rows

Quote:
1,5.985511153460094,5.810456100374132,-0.1750550530859627,0.4715381341398546,0.479656469489082,0.9982359428553963,2.438708915916374,5.998527187211355
with ALL values same except site number

Is it a bug or i made something wrong?
PS.
System - Linux Arch x64

HYPHY 2.220140525beta(MP) for Linux on x86_64

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