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Methodology Questions >> How to >> How do I run the Slatkin Maddison test with a .nwk from MEGA http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1401393138 Message started by Rahsberry on May 29th, 2014 at 12:52pm |
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Title: How do I run the Slatkin Maddison test with a .nwk from MEGA Post by Rahsberry on May 29th, 2014 at 12:52pm
Hi
Apologies for the dumb question, this is my first day using HyPhy. I am trying to perform the Slatkin Maddison test using .nwk files that I exported from MEGA. However HyPhy keeps rejecting them due to how they are named. >>>>>>> Error: Node names should begin with a letter, a number, or an underscore. Had:((((((((((((((('REG.?MID2_Run7_CAACCAAGTC_75':0.000000 Function call stack 1:Read the following data from PROMPT_FOR_FILE:Tree into givenTree; >>>>>>>> Should I make the .nwk files using a different program? I have fallen at the first hurdle! Thanks!!! |
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Title: Re: How do I run the Slatkin Maddison test with a .nwk from MEGA Post by Steven on Jun 3rd, 2014 at 1:43pm
Hello Rahsberry,
It looks like the node id begins with a single quote. We are checking for a letter, a number, or an underscore by using the C++ ctype standard library function "isalnum(x)" on the beginning of the node string. Thanks, Steven |
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