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http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl Methodology Questions >> How to >> How do I use the ReadFromString command http://www.hyphy.org/cgi-bin/hyphy_forums/YaBB.pl?num=1402946791 Message started by hyphyInfant on Jun 16^th, 2014 at 12:26pm

Title: How do I use the ReadFromString command
Post by hyphyInfant on Jun 16^th, 2014 at 12:26pm

Hi there.

Either add '\n' (new-line characters), or use a multi-line string, like in the following example

[code]

dss = ">seq1\naaaaaaaa\n>seq2\ncccccccc\n>seq3\ngggggggg";
DataSet ds = ReadFromString(dss);

// or

dss = "
>seq1
aaaaaaaa
>seq2
cccccccc
>seq3
gggggggg";

DataSet ds = ReadFromString(dss);

[/code]

Cheers,
Sergei

Title: Re: How do I use the ReadFromString command
Post by Steven on Jun 16^th, 2014 at 12:35pm

Hello hyphyinfant,

Please try:
[code]dss = ">seq1\naaaaaaaa\n>seq2\ncccccccc\n>seq3\ngggggggg"; [/code]

FASTA format requires newlines.

Thanks,
Steven