How to Discussion board on how to answer/test biological questions using HyPhy. Post your 'Can I do this?' or 'How do I do this?' questions here (Moderators: Sergei, Simon)

Topics: 324 Posts: 1378

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		Subject	Started By	Replies	Views	Last Post
		relative rate tests	Donna Toleno (Guest)	5	3214	Nov 7th, 2006 at 10:41am By: Sergei
		correction for multiple tests	Jon (Ex Member)	5	3340	Oct 31st, 2006 at 7:45am By: Jon - Ex Member
		Genetic Algorithm with HyPhy	tlefebure	12	6026	Oct 31st, 2006 at 5:49am By: Sergei
		simulation form an ancestral sequence	ofedrigo	1	3364	Oct 24th, 2006 at 11:21am By: Sergei
		GARD and the reading frame	tlefebure	1	1791	Oct 17th, 2006 at 3:14pm By: Sergei
		getting started on codon models	jh	1	1310	Oct 12th, 2006 at 4:17pm By: Sergei
		test for synonymous substitution variation	Donna Toleno (Guest)	1	2234	Oct 10th, 2006 at 2:04pm By: Sergei
		Infer tree for each partition	Miguel	3	2971	Sep 29th, 2006 at 7:27am By: Sergei
		relative ratio test with multiple ratios...	Scott (Guest)	3	2505	Sep 26th, 2006 at 5:18pm By: Sergei
		GA says branch assignments = 0?	Sarah (Ex Member)	2	1732	Sep 20th, 2006 at 9:13pm By: Sarah - Ex Member
		TestBranchDNDS	luli (Guest)	1	1779	Sep 20th, 2006 at 8:59pm By: Sergei
		simulating positive selection on a branch	ofedrigo	3	2155	Sep 20th, 2006 at 8:29pm By: Sergei
		which approach to test for positive selection?	tlefebure	2	2815	Sep 18th, 2006 at 7:25am By: tlefebure
		Clusters - High Performance Computing	swatchpuppy	6	3748	Sep 8th, 2006 at 3:33pm By: Art Poon
		irreversible models	konrad	3	2176	Sep 1st, 2006 at 10:22am By: Sergei
		Error while reading one of the coding frames?	Jose_Patane	4	4094	Aug 31st, 2006 at 1:14pm By: Jose_Patane
		ML basefreqs for each partition	Jose_Patane	2	1726	Aug 30th, 2006 at 11:01am By: Jose_Patane
		How to estimate ML base freqs	Jose_Patane	2	2225	Aug 24th, 2006 at 8:38am By: Jose_Patane
		Constraint addition term	Nathan Clark (Guest)	1	1383	Aug 11th, 2006 at 2:04pm By: Sergei
		Category vars: how to do gamma+discrete component?	jettlogic (Ex Member)	5	3226	Aug 9th, 2006 at 10:52am By: Sergei

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