How to Discussion board on how to answer/test biological questions using HyPhy. Post your 'Can I do this?' or 'How do I do this?' questions here (Moderators: Sergei, Simon)

Topics: 324 Posts: 1378

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		Subject	Started By	Replies	Views	Last Post
		scale the tree on syn or nonsyn via script	Antonio (Guest)	1	1860	Nov 10th, 2005 at 3:09am By: Sergei
		Mac OS X hyphy in "batch" mode?	jamescotton	4	6744	Nov 2nd, 2005 at 10:31am By: Sergei
		inferring topologies	konrad	2	2447	Oct 24th, 2005 at 7:26am By: konrad
		How can I profile a HYPHY execution?	avilella	3	3019	Oct 21st, 2005 at 3:39pm By: Sergei
		HYPHY reading NEXUS charpartitions	jamescotton	1	1777	Oct 21st, 2005 at 8:43am By: Sergei
		Using nonreversible nucleotide models	Jeff Mower (Guest)	7	4513	Oct 13th, 2005 at 9:33am By: Sergei
		constraining branch lengths to observed values	jamescotton	12	7072	Sep 28th, 2005 at 11:13am By: Sergei
		Wong-Nielsen selection test	ofedrigo	0	2003	Sep 27th, 2005 at 7:02am By: ofedrigo
		Command Reference to download..	jamescotton	3	2367	Sep 16th, 2005 at 11:56am By: Sergei
		Relative Ratio Test and 2 nt. subs. models	David_Soria	1	1766	Sep 11th, 2005 at 11:53am By: Sergei
		Relative Ratio tests	jh	1	3294	Sep 1st, 2005 at 11:46am By: Sergei
		comparing branch lengths among subclades in a tree	cwheat	1	1553	Aug 23rd, 2005 at 11:24am By: Sergei
		S,N and S*dS,N*dN in each branch	avilella	1	1677	Aug 4th, 2005 at 12:35pm By: Sergei
		"Free-ratios"-like analysis in PAML	avilella	4	4721	Jul 26th, 2005 at 11:19am By: Sergei
		Codon relative rate test questions	Sergei	0	1435	Jun 27th, 2005 at 11:39am By: Sergei
		Defining custom alphabets for sequence data.	Sergei	1	1691	May 24th, 2005 at 3:10am By: Steven (Guest)
		How to simulate data with user branch lengths	Sergei	0	1123	May 18th, 2005 at 10:42am By: Sergei
		non-synonymous and synonymous rates	adk (Guest)	10	6253	May 11th, 2005 at 2:36pm By: Sergei
		ML with defined constraints ?	Bryony Mackenzie (Guest)	1	1614	May 11th, 2005 at 7:25am By: Sergei
		How to measure the adequacy of a model	Federico Abascal (Guest)	5	3366	May 4th, 2005 at 2:12am By: federico Abascal (Guest)

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