How to Discussion board on how to answer/test biological questions using HyPhy. Post your 'Can I do this?' or 'How do I do this?' questions here (Moderators: Sergei, Simon)

Topics: 324 Posts: 1378

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		Subject	Started By	Replies	Views	Last Post
		Sliding windows purifying selection	Ed	2	1468	May 6th, 2012 at 11:36pm By: Ed
		How do you run SLC/FEL/REL simoultaneously?	barbara mellone	1	1237	Apr 25th, 2012 at 2:31pm By: Sergei
		How to make a bootstrap test on phylogenetic reconstruction???	jackson	0	893	Mar 29th, 2012 at 8:08am By: jackson
		higher throughput compartmentalization analysis	eab	0	797	Feb 27th, 2012 at 7:00am By: eab
		report the result of MEME	psytamer	2	1657	Feb 20th, 2012 at 11:27am By: psytamer
		Index of first position in DataSet	NP	0	857	Feb 15th, 2012 at 2:05pm By: NP
		positive selection analysis	lun	10	4802	Feb 3rd, 2012 at 9:37pm By: Sergei
		positive selection during speciation « Pages 1 2 »	LMC	17	7187	Feb 3rd, 2012 at 6:10am By: LMC
		relative rate test	pscuu	1	1687	Jan 30th, 2012 at 5:22pm By: Sergei
		Using HyPhy's predefined codon models	sspiel	1	1451	Jan 3rd, 2012 at 1:09pm By: Sergei
		Testing dN/dS on a 4 taxon tree	Teri	3	1876	Dec 21st, 2011 at 2:16pm By: Sergei
		How to get detailed Results from command line Ver	SAN	12	5670	Nov 10th, 2011 at 11:49am By: SAN
		very simple statistic, but I'm not sure how/where!	rbjmax	6	3311	Nov 8th, 2011 at 3:58pm By: Sergei
		testing for dated taxa bias	rbjmax	2	1500	Oct 11th, 2011 at 11:39am By: rbjmax
		Dealing with lineage-specific codon bias	dagarfield	0	797	Oct 7th, 2011 at 8:00am By: dagarfield
		re: constant rate model	bioinfo_ucc	4	2344	Aug 25th, 2011 at 3:19pm By: Sergei
		Batch files	jhughes	3	2150	Aug 10th, 2011 at 3:31am By: jhughes
		Getting started	bioinfo_ucc	3	2278	Jun 29th, 2011 at 1:52pm By: Sergei
		branch specific dN/dS><=1 detection,multiple genes	abi	12	6292	Jun 20th, 2011 at 10:57am By: Sergei
		How to assess more than two compartments?	rbjmax	9	3960	Jun 15th, 2011 at 2:13pm By: rbjmax

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