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[REQUEST] Analyzing datasets with different trees (Read 1205 times)
Simon
Ex Member


[REQUEST] Analyzing datasets with different trees
Feb 2nd, 2005 at 11:30am
 
Dear Sergei,

Have we settled yet on a format for different trees on a dataset i.e.

1-120
((a,b),(c,d));
121-190
((a,c),(b,d));

If so, it would be good to have a batch file to perform a Shimodaira-Hasegawa test for differences between trees for a given partition, summary statistics for the differences and similarities (maximum forest, etc.), and an output of the log-likelihood differences on a site-by-site basis, in order to identify sites that are contributing to the different phylogenetic signal.

Best,
Simon
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