Simon
Ex Member
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Dear Sergei,
Have we settled yet on a format for different trees on a dataset i.e.
1-120 ((a,b),(c,d)); 121-190 ((a,c),(b,d));
If so, it would be good to have a batch file to perform a Shimodaira-Hasegawa test for differences between trees for a given partition, summary statistics for the differences and similarities (maximum forest, etc.), and an output of the log-likelihood differences on a site-by-site basis, in order to identify sites that are contributing to the different phylogenetic signal.
Best, Simon
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