Hi all,

I am testing the bivariate model of the codon selection analyses with
a little data file and found out a Segfault error when trying to
print the dSdNtree:

Error:
Invalid Matrix Index [0][1] in a 0 by 0 matrix.
Current BL Command:nonSynM[h1-hShift][v1-vShift]=vectorOfFrequencies[h1-hShift]

Check errors.log for details on execution errors.

Check messages.log details of this run.
Segmentation fault

Any idea of what might be wrong?

The options where:

./HYPHYMP CPU=2 -p

2
2
1
../data/cons.nex
1
y
1
010010
1
5
1
/tmp/res.txt
y
6
1

http://gromit.bio.ub.es/cons.nex

Dear Albert,

I don't think dSdNtree will work properly with the general bivariate analysis, because this analysis uses a fundamentally different way to set up the likelihood function...; I'll take a look into the cause of the crash and get back to you.

Cheers,
Sergei