Dear John,
HyPhy documentation is, sadly, lacking. The three items you list can also be supplemented with
1). Old (3 years out of date) standard analyses documentation Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to
These files are also in the Help directory of the HyPhy distribution.
2). Some simple GUI examples Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to
3). Example batch files in the 'Examples' directory of the distribution (look at the comments embedded in the source for guidance).
4). HyPhy language command reference (about 6 months out of date, will be updated soon): Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to
If you have specific questions, it may be best to post them on this message board.
Cheers,
Sergei
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