Dear Sergei,
I have a similar problem. I use, on a cluster, the version:
Code:/HYPHY 0.9920060914beta(MPI) for Linux on x86_64\
GARD run great, but not the GA-branch.
After I copied the full HYPHY folder to all the nodes (which was not necessary with GARD), and run hyphy with the following command:
Code:$MPIDIR/mpirun -np $PROCS -machinefile machines $HYPHY BASEPATH=$HYPHYDIR /state/partition1/ModelSelectorBranchLocal.bf < $ANSW >& output
with
Code:set DATA=pbp1a.phy
set ANSW=answers
set MPIDIR=/opt/mpich/gnu/bin
set HYPHY=/state/partition1/HYPHY_Source/HYPHYMPI
set HYPHYDIR=/state/partition1/HYPHY_Source/
I obtain the following error:
Code:[tnl7@biosim 1a]$ cat output
+-------------------+
|Choose Genetic Code|
+-------------------+
(1):Universal code. (Genebank transl_table=1).
(2):Vertebrate mitochondrial DNA code. (Genebank transl_table=2).
(3):Yeast mitochondrial DNA code. (Genebank transl_table=3).
(4):Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4).
(5):Invertebrate mitochondrial DNA code. (Genebank transl_table=5).
(6):Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6).
(7):Echinoderm mitochondrial DNA code. (Genebank transl_table=9).
(8):Euplotid Nuclear code. (Genebank transl_table=10).
(9):Alternative Yeast Nuclear code. (Genebank transl_table=12).
(10):Ascidian mitochondrial DNA code. (Genebank transl_table=13).
(11):Flatworm mitochondrial DNA code. (Genebank transl_table=14).
(12):Blepharisma Nuclear code. (Genebank transl_table=15).
Please choose an option (or press q to cancel selection):
(/state/partition1/) Codon file to analyze:Error:MPI Node:0
/state/partition1/_BMS_Aux.ibf could not be opened for reading by fscanf. Path stack: {/state/partition1/,/state/partition1/}
Current BL Command:Read the following data from "_BMS_Aux.ibf":Raw into sampleCount;
p0_31098: p4_error: interrupt SIGx
What is the "_BMS_Aux.ibf" file?
Is my HYPHY out of date?
Thank you Sergei...
-Tristan