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hardware requirements/memory usage (Read 1922 times)
acobian
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UNAM Mexico
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hardware requirements/memory usage
Mar 21st, 2007 at 9:27am
 
Hi,
my question is about what do i have to know about hardware requirements/memory usage. Because I´ve generated a huge dataset (269 taxa, 9789bp, 3263 codons, with a tree which contains more than 200 internal and terminal nodes. I am asking permission to use a supercomputer (or a cluster) and I need to know how much memory I´m going to use with this database in a positive selection analysis and determination of ds, dn? thanks and best regards,
acobian[color=Purple][/color] Smiley
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Sergei
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Datamonkeys are forever...

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Re: hardware requirements/memory usage
Reply #1 - Mar 22nd, 2007 at 10:40am
 
Dear acobian,

With some methods (e.g. SLAC) you can run these data on a modern (512 MB RAM or so) desktop.

Memory requirements for the other analyses are not too steep either. Your data should run fine in ~ 128-256MB.

Cheers,
Sergei
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