Hi Sergei, Simon and everyone,
I would like to know how could I infer a topology using JTT+F +gamma distribution from a batch file. Alternatively, is there any way to pass parameters (the input file name, numbers for procedure selection) when running a standard analysis from command line?
Do you think HYPHY is suitable/recommended for this kind of phylogeny inferrence? What do you recommend I should use instead?
Thank you very much in advance.
Nicolás.-