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dN/dS rate analysis. Codon Data File ? (Read 2185 times)

mrealpe YaBB Newbies Offline Feed your monkey! Posts: 5	dN/dS rate analysis. Codon Data File ? Nov 28^th, 2007 at 5:39am Trying to run the dN/dS rate analysis the Hyphy asked for a codon data file. Is not supposed to be installed upon set up of the package ?, otherwise which format should have ?, however the analysis appears to begin afterwards. Mauricio.
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Re: dN/dS rate analysis. Codon Data File ?
Reply #1 - Nov 28^th, 2007 at 7:48am

Dear Mauricio,

The codon data file should contain an alignment of sequences to be analyzed for dN/dS rates; as you can clearly see, installing a single alignment file during the set up of the package would not well advised, because HyPhy would then only ever be able to analyze a single set of sequences. However, you can experiment with some example alignments located in the 'data' directory.

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