Greetings - I'm trying to compile an MPI version of hyphy so I can try the GABranch test.  I plan to run it on an 8-core Mac with OS 10.4. I installed mpich using MacPorts and then edited the build.sh script so it could find the header files.  I added -I/op
t/local/include/mpich2 to the COMPILER_FLAGS variable.  Now I get an error during linking that I don't know how to fix:

Linking HYPHYMPI
g++ -w -fsigned-char -o HYPHYMPI obj_MPI/HYNetInterface.cpp.o obj_MPI/Net.cpp.o obj_MPI/attach.c.o obj_MPI/auth.c.o obj_MPI/baseobj.cpp.o obj_MPI/batchlan.cpp.o obj_MPI/batchlan2.cpp.o obj_MPI/bgm.cpp.o obj_MPI/btree.c.o obj_MPI/btree_rb.c.o obj_MPI/build.c.o obj_MPI/calcnode.cpp.o obj_MPI/category.cpp.o obj_MPI/copy.c.o obj_MPI/delete.c.o obj_MPI/error.cpp.o obj_MPI/expr.c.o obj_MPI/fisher_exact.cpp.o obj_MPI/func.c.o obj_MPI/hash.c.o obj_MPI/hyphyunixutils.cpp.o obj_MPI/insert.c.o obj_MPI/likefunc.cpp.o obj_MPI/list.cpp.o obj_MPI/main-unix.cxx.o obj_MPI/main.c.o obj_MPI/matrix.cpp.o obj_MPI/nexus.cpp.o obj_MPI/opcodes.c.o obj_MPI/os.c.o obj_MPI/pager.c.o obj_MPI/parse.c.o obj_MPI/parser.cpp.o obj_MPI/parser2.cpp.o obj_MPI/polynoml.cpp.o obj_MPI/pragma.c.o obj_MPI/printf.c.o obj_MPI/random.c.o obj_MPI/regex.cpp.o obj_MPI/scfg.cpp.o obj_MPI/select.c.o obj_MPI/sequence.cpp.o obj_MPI/site.cpp.o obj_MPI/strings.cpp.o obj_MPI/table.c.o obj_MPI/tokenize.c.o obj_MPI/trigger.c.o obj_MPI/update.c.o obj_MPI/util.c.o obj_MPI/vacuum.c.o obj_MPI/vdbe.c.o obj_MPI/where.c.o -lssl -lcrypto -lcurl -lm -lmpich
/usr/bin/ld: can't locate file for: -lmpich

Any suggestions are appreciated!
Mike

Dear Mike,

Thanks for reporting the problem and a workaround!

Cheers,
Sergei

Dear Vijay,

Try this build script (Multimedia File Viewing and Clickable Links are available for Registered Members only!!  You need to Login)
Drop it into the HyPhy source directory and type

$sh build.sh MPI

This works on OS X Leopard with OpenMPI installed.

Cheers,
Sergei

Hey Art,

I noted the echo problem last week - should be fixed in the latest build.

Cheers,
Sergei