HyPhy message board - can't install hyphy command line on Red Hat 4.5.1

	Welcome, Guest. Please Login

Home

Help

HyPhy message board › HYPHY Package › HyPhy feedback › can't install hyphy command line on Red Hat 4.5.1

(Moderators: Sergei, Simon)

‹ Previous Topic | Next Topic ›

Pages: 1

Send Topic

can't install hyphy command line on Red Hat 4.5.1 (Read 1797 times)

indapa

YaBB Newbies

Offline

Feed your monkey!

Posts: 1

can't install hyphy command line on Red Hat 4.5.1
Nov 27^th, 2011 at 9:22am

Hi,

I am a newbie to HyPhy and attempting to install it on RedHat
I have cmake installed and run the command:
> cmake ./
just fine

Next, I try:
> make MP2
and get the error:

[100%] Building CXX object CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o
Linking CXX executable HYPHYMP
/usr/bin/ld: CMakeFiles/HYPHYMP.dir/contrib/SQLite-3.6.17/sqlite3.c.o: undefined reference to symbol 'dlclose@@GLIBC_2.2.5'
/usr/bin/ld: note: 'dlclose@@GLIBC_2.2.5' is defined in DSO /lib64/libdl.so.2 so try adding it to the linker command line
/lib64/libdl.so.2: could not read symbols: Invalid operation
collect2: ld returned 1 exit status
make[3]: *** [HYPHYMP] Error 1
make[2]: *** [CMakeFiles/HYPHYMP.dir/all] Error 2
make[1]: *** [CMakeFiles/MP2.dir/rule] Error 2
make: *** [MP2] Error 2

I am not sure how to interpret the error message. Can you help me out?

IP Logged

Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: can't install hyphy command line on Red Hat 4.5.1 Reply #1 - Nov 27^th, 2011 at 10:57am Hi indapa, Looks like our cmake script needs to be modified to look for libdl. In the meantime, please edit line 210 in CMakeLists.txt to read Code: target_link_libraries(HYPHYMP crypto curl pthread ssl ldl) and then do Code: $rm CMake*.cahce $cmake ./ $make MP2 Sergei
Back to top	Associate Professor Division of Infectious Diseases Division of Biomedical Informatics School of Medicine University of California San Diego WWW IP Logged

Pages: 1

Send Topic

‹ Previous Topic | Next Topic ›

« Home

‹ Board

Top of this page