Hi,

I got some erors while trying to run GARD from batch files. the errors are still of the same type : the program seems to not interpret environment variables such as PROMPT_FOR_FILE or DATAFILE_TREE and returns error saying these are wrong values.

for instance, when tryng to run the orginal GARD.bf script, I get this output:

Initialized GARD on 20 MPI nodes.
Population size is 38 models

/usr/remote/hyphy/HYPHY/TemplateBatchFiles/Nucleotide file to screen::
/usr/remote/hyphy/HYPHY/TemplateBatchFiles/Nucleotide file to screen::
Master node received an error:
Could not find source dataset file:PROMPT_FOR_FILE Path stack: {/var/spool/torqu
e/tmpdir/1420633.pbil-torque.univ-lyon1.fr/,/usr/remote/hyphy/HYPHY/TemplateBatc
hFiles/}
Call stack
1 : Read Data Set ds from file PROMPT_FOR_FILE

whereas the name of file given to the prompt is actually present in the first directory of the Path stack.

another call with a custom version of GARD where I try to provide the tree topology. Again, the program bumps on an environment variable:

Initialized GARD on 20 MPI nodes.
Population size is 38 models

/var/spool/torque/tmpdir/1389590.pbil-torque.univ-lyon1.fr/Nucleotide file to sc
reen::
Master node received an error:
Illegal right hand side in call to Tree id = ...; it must be a string, a Newick
tree spec or a topology
Call stack
1 : Build Tree givenTree from string DATAFILE_TREE

Maybe it come from missing libraries or parameter definitions... Can you lpease help me about this?

Thanks in advance.

Florent