Welcome, Guest. Please Login
YaBB - Yet another Bulletin Board
 
  HomeHelpSearchLogin  
 
Using HyPhy with BioPerl (Read 2421 times)
Daisie Huang
YaBB Newbies
*
Offline


Curious HyPhy user

Posts: 3
Using HyPhy with BioPerl
Sep 10th, 2012 at 12:31pm
 
Hi all,

I don't know if anyone uses HyPhy with BioPerl, but I've recently added some functionality to that package to allow you to programatically call a custom batch file using BioPerl. This way you can call your batch files with alignments and trees that are the results of previous BioPerl analyses or inputs.

You can access the latest version of BioPerl at Multimedia File Viewing and Clickable Links are available for Registered Members only!!  You need to Login Login
Back to top
 
 
IP Logged
 
Sergei
YaBB Administrator
*****
Offline


Datamonkeys are forever...

Posts: 1658
UCSD
Gender: male
Re: Using HyPhy with BioPerl
Reply #1 - Sep 11th, 2012 at 11:06am
 
Hi Daisie,

This is great. Thanks! We run a Python shop at UCSD, but reaching out to BioPerl community is an awesome feature. Let me know if there is anything we can do to smooth the integration.

Sergei
Back to top
 

Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego
WWW WWW  
IP Logged