Hello.

I am running Branch-site REL analyses with the HyPhy package, which have generally been successful, but occasionally I get the following error message:

"An error occurred: Cannot reuse the filter 'def' because it is already being used by likelihood function 'three_LF', and the two likelihood functions impose different leaf-to-sequence mapping. Create a copy the filter and pass it to the second likelihood function to resolve. Current operation/job has been terminated."

I have run other analyses with HyPhy using the same files without issue. Any advice on how to deal with this problem would be appreciated.
Thanks.
(Message posted without response in HyPhy feedback)

Following on from 3), it's seems that the error only occurs upon running subsequent analyses. If I restart each time, there is no error. So I can continue working.

Thanks.

(I am running through the GUI.)